miARmaSeq presents a highly flexible modular structure to perform the different stages of the miRNA analysis. In this documentation, each module and its parameters will be extensively described, including the description of the input and output files, the different parameters for the analysis and the creation of the configuration file to execute it.
RNASeq is used to analyze the continually changing cellular transcriptome as it reveals the presence and quantity of RNA in a biological sample at a given moment in time. miARmaSeq facilitates the ability to look at alternative gene spliced transcripts, gene fusion and statistically changes in gene expression. More information is available in the following link
Circular RNA (circRNA) is a novel type of RNA that forms a covalently closed continuous loop, some of which are highly represented in the eukaryotic transcriptome. They have been related to miRNA regulation increasing cancer development. miARmaSeq includes different analysis to study those RNAs. The complete documentation is availabe in the following link.